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Nature Communications|December 4, 2023
Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamicsYasa Baig, Helena R Ma, Helen Xu, et al.Proceedings of the National Academy of Sciences of the United States of America|March 17, 2025
Dynamics of an algae-bacteria microcosm: Photosynthesis, chemotaxis, and expulsion in inhomogeneous active matterPraneet Prakash, Yasa Baig, François J Peaudecerf, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Emergence of population-level feedback control by transposon-plasmid coevolutionRohan Maddamsetti, Grayson Hamrick, Yuanchi Ha, et al.Nature Communications|July 2, 2025
Scaling laws of bacterial and archaeal plasmidsRohan Maddamsetti, Irida Shyti, Maggie L Wilson, et al.Biorxiv : the Preprint Server for Biology|July 16, 2025
Linear scaling reveals low-dimensional structure in observable microbial dynamicsZhengqing Zhou, Xiaoli Chen, Emrah Şimşek, et al.Patterns (New York, N.Y.)|October 24, 2022
Distributed information encoding and decoding using self-organized spatial patternsJia Lu, Ryan Tsoi, Nan Luo, et al.Biorxiv : the Preprint Server for Biology|January 23, 2026
A foundation model for microbial growth dynamicsZachary A Holmes, Irida Shyti, Alexandra L Hoffman, et al.Pageof 1