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Briefings in Bioinformatics|February 11, 2026
Signal-based spatial domain identification of spatially resolved transcriptomics with multigraph fusionYaxiong Ma, Yu Wang, Xiaoke MaIEEE Transactions on Computational Biology and Bioinformatics|November 3, 2025
Identifying Spatial Domains From Spatial Multi-Omics Data With Graph Mutual Information and Deep Subspace LearningYu Wang, Wei Ma, Yaxiong Ma, et al.Bioinformatics (Oxford, England)|March 21, 2026
SA2E: spatial-aware auto-encoder for cell type deconvolution of spatial transcriptomics dataYaxiong Ma, Zengfa Dou, Yuhong Zha, et al.IEEE Transactions on Computational Biology and Bioinformatics|June 5, 2026
Robust Algorithm With Contrastive Learning for Identifying Spatial Domains From Noised Spatial Transcriptomics DataYaxiong Ma, Kai Kang, Min Zhang, et al.Nature Communications|March 21, 2026
Network model for alignment, stitching and slice-to-volume 3D reconstruction of large-scale spatially resolved slicesYu Wang, Zaiyi Liu, Xiaoke MaGenome Medicine|March 14, 2025
MuCST: restoring and integrating heterogeneous morphology images and spatial transcriptomics data with contrastive learningYu Wang, Zaiyi Liu, Xiaoke MaGenome Biology|May 23, 2024
MNMST: topology of cell networks leverages identification of spatial domains from spatial transcriptomics dataYu Wang, Zaiyi Liu, Xiaoke MaBriefings in Functional Genomics|November 28, 2012
Biological network analysis: insights into structure and functionsXiaoke Ma, Lin GaoMolecules (Basel, Switzerland)|April 28, 2018
Regularized Multi-View Subspace Clustering for Common Modules Across Cancer StagesEnli Zhang, Xiaoke MaIEEE/ACM Transactions on Computational Biology and Bioinformatics|March 22, 2022
Network-Based Structural Learning Nonnegative Matrix Factorization Algorithm for Clustering of scRNA-Seq DataWenming Wu, Xiaoke MaPageof 2,407