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Biomolecules|June 26, 2025
MTPrompt-PTM: A Multi-Task Method for Post-Translational Modification Prediction Using Prompt Tuning on a Structure-Aware Protein Language ModelYe Han, Fei He, Qing Shao, et al.Nature Machine Intelligence|January 23, 2024
Immunology: Meta-learning for T cell-receptor binding specificity and beyondDuolin Wang, Fei He, Yang Yu, et al.Research Square|April 1, 2024
Integrating Protein Structure Prediction and Bayesian Optimization for Peptide DesignNegin Manshour, Fei He, Duolin Wang, et al.Current Protocols|May 9, 2026
Efficient Adaptation of Structure-Aware Protein Language Models for Diverse Protein ApplicationsDuolin Wang, Yichuan Zhang, Yongfang Qin, et al.Biorxiv : the Preprint Server for Biology|May 18, 2026
DPLM: Dynamics-aware Protein Language Model via contrastive learning between sequence and molecular dynamics simulation trajectoryYuexu Jiang, Duolin Wang, Ibrahim A Imam, et al.Computational and Structural Biotechnology Journal|August 11, 2020
MU-PseUDeep: A deep learning method for prediction of pseudouridine sitesSaad M Khan, Fei He, Duolin Wang, et al.Methods in Molecular Biology (Clifton, N.J.)|July 2, 2025
Enhancing Structure-Aware Protein Language Models with Efficient Fine-Tuning for Various Protein Prediction TasksYichuan Zhang, Yongfang Qin, Mahdi Pourmirzaei, et al.Journal of Materials Chemistry. B|March 9, 2026
Discovering naturally occurring antifreeze peptides from microbiome by integrating protein language models and molecular dynamics simulationIbrahim A Imam, Trevor Morey, Yuexu Jiang, et al.Frontiers in Genetics|December 12, 2019
Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of SoybeanYang Liu, Duolin Wang, Fei He, et al.Langmuir : the ACS Journal of Surfaces and Colloids|January 15, 2025
Integrating Protein Language Model and Molecular Dynamics Simulations to Discover Antibiofouling PeptidesIbrahim A Imam, Shea Bailey, Duolin Wang, et al.Pageof 613