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Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology|March 31, 2022
[Advances of chromatogram retention time alignment algorithms in proteomics]Yi Liu, Cheng Chang, Yunping ZhuProteomics|July 10, 2020
A Deep Learning-Based Tumor Classifier Directly Using MS Raw DataHao Dong, Yi Liu, Wen-Feng Zeng, et al.Analytical Chemistry|June 29, 2019
AP3: An Advanced Proteotypic Peptide Predictor for Targeted Proteomics by Incorporating Peptide DigestibilityZhiqiang Gao, Cheng Chang, Jinghan Yang, et al.Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology|September 28, 2019
[Research progress of feature selection and machine learning methods for mass spectrometry-based protein biomarker discovery]Kaikun Xu, Mingfei Han, Chuanxi Huang, et al.Nature Communications|December 11, 2023
DeepRTAlign: toward accurate retention time alignment for large cohort mass spectrometry data analysisYi Liu, Yun Yang, Wendong Chen, et al.STAR Protocols|June 15, 2024
Protocol for identifying and comparing molecular prognosis subtypes of IgAN using RJuan Wang, Yi Liu, Xizhao Chen, et al.Proteomics|June 24, 2020
A Comprehensive Evaluation of MS/MS Spectrum Prediction Tools for Shotgun ProteomicsRui Xu, Jie Sheng, Mingze Bai, et al.Proteomics|December 7, 2018
PPICurator: A Tool for Extracting Comprehensive Protein-Protein Interaction InformationMansheng Li, Qiang He, Jie Ma, et al.Scientific Reports|June 15, 2017
In-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing valuesJinxia Wang, Liwei Li, Tao Chen, et al.Proteomics|March 10, 2025
A Review of Retention Time Alignment Methods and Tools for Proteomics DataYi Liu, Kaikun Xu, Cheng ChangPageof 1,536