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Evolutionary Bioinformatics Online|August 13, 2020
Exploiting Homoplasy in Genome-Wide Association Studies to Enhance Identification of Antibiotic-Resistance Mutations in Bacterial GenomesYi-Pin Lai, Thomas R IoergerBMC Bioinformatics|November 24, 2018
A statistical method to identify recombination in bacterial genomes based on SNP incompatibilityYi-Pin Lai, Thomas R IoergerMethods in Molecular Biology (Clifton, N.J.)|October 28, 2021
Analysis of Gene Essentiality from TnSeq Data Using TransitThomas R IoergerNature Communications|September 21, 2017
A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamideAdam N Yadon, Kashmeel Maharaj, John H Adamson, et al.Biorxiv : the Preprint Server for Biology|June 4, 2025
Evaluating selection at intermediate scales within genes provides robust identification of genes under positive selection in M. tuberculosis clinical isolatesThomas R Ioerger, Anthony ShatbyTuberculosis (Edinburgh, Scotland)|October 1, 2025
Evaluating selection at intermediate scales within genes provides robust identification of genes under positive selection in M. tuberculosis clinical isolatesThomas R Ioerger, Anthony ShatbyACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|January 1, 2024
Dual ICA to extract interacting sets of genes and conditions from transcriptomic dataSanjeevani Choudhery, Thomas R IoergerActa Crystallographica. Section D, Biological Crystallography|November 28, 2002
Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinatesThomas R Ioerger, James C SacchettiniCurrent Opinion in Microbiology|June 2, 2009
Structural genomics approach to drug discovery for Mycobacterium tuberculosisThomas R Ioerger, James C SacchettiniIEEE/ACM Transactions on Computational Biology and Bioinformatics|September 11, 2015
Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential GenesMichael A DeJesus, Thomas R IoergerPageof 16