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Microbiome|December 5, 2025
Deciphering the personalized functional redundancy hierarchy in the gut microbiomeYiqi Jiang, Lijia Che, Shuai Cheng LiNucleic Acids Research|June 17, 2024
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiomeShuai Wang, Yiqi Jiang, Lijia Che, et al.Nucleic Acids Research|November 11, 2024
GutMetaNet: an integrated database for exploring horizontal gene transfer and functional redundancy in the human gut microbiomeYiqi Jiang, Yanfei Wang, Lijia Che, et al.Briefings in Bioinformatics|April 30, 2026
Reconstructing 3D transcriptional organization from spatial transcriptomics reveals consistent oncogenic translocations and developmental dynamicsYifei Sheng, Shiying Li, Zhengyang Xue, et al.Briefings in Bioinformatics|November 24, 2024
Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiomeYinhu Li, Guangze Pan, Shuai Wang, et al.Computational and Structural Biotechnology Journal|March 28, 2022
Both simulation and sequencing data reveal coinfections with multiple SARS-CoV-2 variants in the COVID-19 pandemicYinhu Li, Yiqi Jiang, Zhengtu Li, et al.Algorithms for Molecular Biology : AMB|January 5, 2013
The difficulty of protein structure alignment under the RMSDShuai Cheng LiNucleic Acids Research|November 14, 2022
Incorporating cell hierarchy to decipher the functional diversity of single cellsLingxi Chen, Shuai Cheng LiBriefings in Bioinformatics|February 8, 2023
Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoiresYuepeng Jiang, Shuai Cheng LiBMC Bioinformatics|January 15, 2010
Calibur: a tool for clustering large numbers of protein decoysShuai Cheng Li, Yen Kaow NgPageof 15