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Biorxiv : the Preprint Server for Biology|January 31, 2024
EvoAug-TF: Extending evolution-inspired data augmentations for genomic deep learning to TensorFlowYiyang Yu, Shivani Muthukumar, Peter K KooBioinformatics (Oxford, England)|February 17, 2024
EvoAug-TF: extending evolution-inspired data augmentations for genomic deep learning to TensorFlowYiyang Yu, Shivani Muthukumar, Peter K KooGenome Biology|July 14, 2025
Evaluating the representational power of pre-trained DNA language models for regulatory genomicsZiqi Tang, Nirali Somia, Yiyang Yu, et al.Biorxiv : the Preprint Server for Biology|March 11, 2024
Evaluating the representational power of pre-trained DNA language models for regulatory genomicsZiqi Tang, Nirali Somia, Yiyang Yu, et al.Nature Machine Intelligence|July 29, 2021
Improving representations of genomic sequence motifs in convolutional networks with exponential activationsPeter K Koo, Matt PloenzkeNature Genetics|September 16, 2024
Interpreting cis-regulatory interactions from large-scale deep neural networksShushan Toneyan, Peter K KooBiorxiv : the Preprint Server for Biology|July 18, 2023
Interpreting <i>Cis</i>-Regulatory Interactions from Large-Scale Deep Neural Networks for GenomicsShushan Toneyan, Peter K KooCurrent Opinion in Systems Biology|September 9, 2020
Deep learning for inferring transcription factor binding sitesPeter K Koo, Matt PloenzkePlos Computational Biology|December 20, 2019
Representation learning of genomic sequence motifs with convolutional neural networksPeter K Koo, Sean R EddyBiorxiv : the Preprint Server for Biology|May 7, 2026
Designing DNA With Tunable Regulatory Activity Using Discrete DiffusionAnirban Sarkar, Alejandra Duran, Yiyang Yu, et al.Pageof 12