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BMC Bioinformatics|April 6, 2013
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructionsYongchao Liu, Adrianto Wirawan, Bertil SchmidtBMC Bioinformatics|June 3, 2014
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing dataAdrianto Wirawan, Robert S Harris, Yongchao Liu, et al.Bioinformatics (Oxford, England)|March 30, 2010
Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architecturesAdrianto Wirawan, Chee Keong Kwoh, Bertil SchmidtBMC Bioinformatics|July 22, 2017
CLOVE: classification of genomic fusions into structural variation eventsJan Schröder, Adrianto Wirawan, Bertil Schmidt, et al.BMC Bioinformatics|September 19, 2008
CBESW: sequence alignment on the Playstation 3Adrianto Wirawan, Chee Keong Kwoh, Nim Tri Hieu, et al.Methods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Multiple protein sequence alignment with MSAProbsYongchao Liu, Bertil SchmidtBioinformatics (Oxford, England)|September 11, 2012
Long read alignment based on maximal exact match seedsYongchao Liu, Bertil SchmidtBioinformatics (Oxford, England)|December 4, 2012
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence dataYongchao Liu, Jan Schröder, Bertil SchmidtPlos One|January 28, 2014
CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seedingYongchao Liu, Bernt Popp, Bertil SchmidtIEEE/ACM Transactions on Computational Biology and Bioinformatics|June 14, 2016
Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome DataYongchao Liu, Thomas Hankeln, Bertil SchmidtPageof 22