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BMC Bioinformatics|August 27, 2011
Parallelized short read assembly of large genomes using de Bruijn graphsYongchao Liu, Bertil Schmidt, Douglas L MaskellBMC Research Notes|April 8, 2010
CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractionsYongchao Liu, Bertil Schmidt, Douglas L MaskellBMC Research Notes|May 7, 2009
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing unitsYongchao Liu, Douglas L Maskell, Bertil SchmidtBioinformatics (Oxford, England)|June 26, 2010
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilitiesYongchao Liu, Bertil Schmidt, Douglas L MaskellBMC Bioinformatics|March 31, 2011
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPIYongchao Liu, Bertil Schmidt, Douglas L MaskellBioinformatics (Oxford, England)|May 12, 2012
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transformYongchao Liu, Bertil Schmidt, Douglas L MaskellBMC Bioinformatics|February 28, 2013
A hybrid short read mapping acceleratorYupeng Chen, Bertil Schmidt, Douglas L MaskellMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Multiple protein sequence alignment with MSAProbsYongchao Liu, Bertil SchmidtBioinformatics (Oxford, England)|September 11, 2012
Long read alignment based on maximal exact match seedsYongchao Liu, Bertil SchmidtIEEE Transactions on Information Technology in Biomedicine : a Publication of the IEEE Engineering in Medicine and Biology Society|March 11, 2009
High speed biological sequence analysis with hidden Markov models on reconfigurable platformsTimothy F Oliver, Bertil Schmidt, Yanto Jakop, et al.Pageof 22