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Proceedings. IEEE International Conference on Bioinformatics and Biomedicine|July 4, 2025
The Combined Focal Cross Entropy and Dice Loss Function for Segmentation of Protein Secondary Structures from Cryo-EM 3D Density mapsYongcheng Mu, Jiangwen Sun, Jing HeACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|July 26, 2026
Benchmarking and Improving Foundation Model Dietary Estimates from Meal ImagesYongcheng Mu, Jiangwen Sun, Jing HeACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|January 9, 2026
An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density MapsThu Nguyen, Jiangwen Sun, Yongcheng Mu, et al.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|July 15, 2022
Using Curriculum Learning in Pattern Recognition of 3-dimensional Cryo-electron Microscopy Density MapsYangmei Deng, Yongcheng Mu, Salim Sazzed, et al.Frontiers in Bioinformatics|October 28, 2022
A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural NetworksYongcheng Mu, Salim Sazzed, Maytha Alshammari, et al.Bioinformatics Advances|November 27, 2024
The combined focal loss and dice loss function improves the segmentation of beta-sheets in medium-resolution cryo-electron-microscopy density mapsYongcheng Mu, Thu Nguyen, Bryan Hawickhorst, et al.QRB Discovery|July 24, 2023
Refinement of AlphaFold2 models against experimental and hybrid cryo-EM density mapsMaytha Alshammari, Willy Wriggers, Jiangwen Sun, et al.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|July 26, 2026
DeepSSETracer 2.0: Improved Deep Learning Model Performance for Protein Secondary Structure Segmentation from Cryo-EM MapsBryan Hawickhorst, Thu Nguyen, Willy Wriggers, et al.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine|January 11, 2024
Highly Scalable Task Grouping for Deep Multi-Task Learning in Prediction of Epigenetic EventsMohammad Shiri, Jiangwen SunJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 24, 2025
A Biologically Informed and Efficient DNA Sequence Learner for Predicting Functional Genomics EventsMohammad Shiri, Jiangwen SunPageof 369