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Journal of Molecular Recognition : JMR|October 27, 2009
Preferred drifting along the DNA major groove and cooperative anchoring of the p53 core domain: mechanisms and scenariosYongping Pan, Ruth NussinovPlos Computational Biology|July 25, 2009
Cooperativity dominates the genomic organization of p53-response elements: a mechanistic viewYongping Pan, Ruth NussinovThe Journal of Physical Chemistry. B|May 9, 2008
p53-Induced DNA bending: the interplay between p53-DNA and p53-p53 interactionsYongping Pan, Ruth NussinovPlos Computational Biology|August 12, 2010
Lysine120 interactions with p53 response elements can allosterically direct p53 organizationYongping Pan, Ruth NussinovThe Journal of Biological Chemistry|November 7, 2006
Structural basis for p53 binding-induced DNA bendingYongping Pan, Ruth NussinovPlos Computational Biology|June 24, 2011
The role of response elements organization in transcription factor selectivity: the IFN-β enhanceosome exampleYongping Pan, Ruth NussinovJournal of Molecular Biology|June 11, 2005
CD4 binding partially locks the bridging sheet in gp120 but leaves the beta2/3 strands flexibleYongping Pan, Buyong Ma, Ruth NussinovStructure (London, England : 1993)|December 13, 2006
"Similarity trap" in protein-protein interactions could be carcinogenic: simulations of p53 core domain complexed with 53BP1 and BRCA1 BRCT domainsJin Liu, Yongping Pan, Buyong Ma, et al.The Journal of Biological Chemistry|May 8, 2004
Characterization of the conformational state and flexibility of HIV-1 glycoprotein gp120 core domainYongping Pan, Buyong Ma, Ozlem Keskin, et al.Trends in Genetics : TIG|January 16, 2010
Mechanisms of transcription factor selectivityYongping Pan, Chung-Jung Tsai, Buyong Ma, et al.Pageof 65