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Journal of Computational Chemistry
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April 25, 2017
Conformational changes of ubiquitin under high pressure conditions: A pressure simulated tempering molecular dynamics study
Yoshiharu Mori, Yuko Okamoto
Journal of Computational Chemistry
|
October 16, 2015
Simulated tempering based on global balance or detailed balance conditions: Suwa-Todo, heat bath, and Metropolis algorithms
Yoshiharu Mori, Hisashi Okumura
The Journal of Physical Chemistry Letters
|
August 19, 2015
Pressure-Induced Helical Structure of a Peptide Studied by Simulated Tempering Molecular Dynamics Simulations
Yoshiharu Mori, Hisashi Okumura
Proteins
|
July 29, 2014
Molecular dynamics of the structural changes of helical peptides induced by pressure
Yoshiharu Mori, Hisashi Okumura
The Journal of Physical Chemistry. B
|
November 27, 2024
Stabilization Mechanism of Initiator Transfer RNA in the Small Ribosomal Subunit from Coarse-Grained Molecular Simulations
Yoshiharu Mori, Shigenori Tanaka
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
|
March 19, 2013
Free-energy analyses of a proton transfer reaction by simulated-tempering umbrella sampling and first-principles molecular dynamics simulations
Yoshiharu Mori, Yuko Okamoto
The Journal of Physical Chemistry. B
|
July 11, 2023
Anesthetic Binding Induced Motion of GABA<sub>A</sub> Receptors Revealed by Coarse-Grained Molecular Dynamics Simulations
Shuya Nakata, Yoshiharu Mori, Shigenori Tanaka
Methods in Molecular Biology (Clifton, N.J.)
|
October 5, 2012
Enhanced sampling algorithms
Ayori Mitsutake, Yoshiharu Mori, Yuko Okamoto
Journal of Chemical Information and Modeling
|
October 16, 2024
Navigating Ultralarge Virtual Chemical Spaces with Product-of-Experts Chemical Language Models
Shuya Nakata, Yoshiharu Mori, Shigenori Tanaka
Biophysical Reviews
|
May 23, 2019
Molecular simulations by generalized-ensemble algorithms in isothermal-isobaric ensemble
Masataka Yamauchi, Yoshiharu Mori, Hisashi Okumura
Page
of 4
Search research articles
Search
Showing results (1-10 of 31) with videos related to
Sort By:
Page
of 4
Journal of Computational Chemistry
|
April 25, 2017
Conformational changes of ubiquitin under high pressure conditions: A pressure simulated tempering molecular dynamics study
Yoshiharu Mori, Yuko Okamoto
Journal of Computational Chemistry
|
October 16, 2015
Simulated tempering based on global balance or detailed balance conditions: Suwa-Todo, heat bath, and Metropolis algorithms
Yoshiharu Mori, Hisashi Okumura
The Journal of Physical Chemistry Letters
|
August 19, 2015
Pressure-Induced Helical Structure of a Peptide Studied by Simulated Tempering Molecular Dynamics Simulations
Yoshiharu Mori, Hisashi Okumura
Proteins
|
July 29, 2014
Molecular dynamics of the structural changes of helical peptides induced by pressure
Yoshiharu Mori, Hisashi Okumura
The Journal of Physical Chemistry. B
|
November 27, 2024
Stabilization Mechanism of Initiator Transfer RNA in the Small Ribosomal Subunit from Coarse-Grained Molecular Simulations
Yoshiharu Mori, Shigenori Tanaka
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
|
March 19, 2013
Free-energy analyses of a proton transfer reaction by simulated-tempering umbrella sampling and first-principles molecular dynamics simulations
Yoshiharu Mori, Yuko Okamoto
The Journal of Physical Chemistry. B
|
July 11, 2023
Anesthetic Binding Induced Motion of GABA<sub>A</sub> Receptors Revealed by Coarse-Grained Molecular Dynamics Simulations
Shuya Nakata, Yoshiharu Mori, Shigenori Tanaka
Methods in Molecular Biology (Clifton, N.J.)
|
October 5, 2012
Enhanced sampling algorithms
Ayori Mitsutake, Yoshiharu Mori, Yuko Okamoto
Journal of Chemical Information and Modeling
|
October 16, 2024
Navigating Ultralarge Virtual Chemical Spaces with Product-of-Experts Chemical Language Models
Shuya Nakata, Yoshiharu Mori, Shigenori Tanaka
Biophysical Reviews
|
May 23, 2019
Molecular simulations by generalized-ensemble algorithms in isothermal-isobaric ensemble
Masataka Yamauchi, Yoshiharu Mori, Hisashi Okumura
Page
of 4