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Briefings in Bioinformatics|January 13, 2026
Enhancing TFEA.ChIP with ENCODE regulatory maps for generalizable transcription factor enrichmentYosra Berrouayel, Luis Del PesoGigabyte (Hong Kong, China)|April 6, 2026
Transcriptomic profile of embryoid bodies under hypoxia at single cell levelBárbara Acosta-Iborra, Yosra Berrouayel, Laura Puente-Santamaría, et al.International Journal of Molecular Sciences|July 27, 2024
Bhlhe40 Regulates Proliferation and Angiogenesis in Mouse Embryoid Bodies under HypoxiaBárbara Acosta-Iborra, Ana Isabel Gil-Acero, Marta Sanz-Gómez, et al.Plos One|June 18, 2024
SinglePointRNA, an user-friendly application implementing single cell RNA-seq analysis softwareLaura Puente-Santamaría, Luis Del PesoBiomedicines|April 26, 2018
Hypoxia and Chromatin: A Focus on Transcriptional Repression MechanismsMichael Batie, Luis Del Peso, Sonia RochaBioinformatics (Oxford, England)|July 27, 2019
TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasetsLaura Puente-Santamaria, Wyeth W Wasserman, Luis Del PesoBMC Genomics|June 15, 2014
Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentRebecca Worsley Hunt, Anthony Mathelier, Luis Del Peso, et al.The Biochemical Journal|August 30, 2007
Identification of a region on hypoxia-inducible-factor prolyl 4-hydroxylases that determines their specificity for the oxygen degradation domainsDiego Villar, Alicia Vara-Vega, Manuel O Landázuri, et al.Nucleic Acids Research|January 12, 2010
Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site predictionAmaya Ortiz-Barahona, Diego Villar, Nuria Pescador, et al.BMC Bioinformatics|June 1, 2022
Hypoxia classifier for transcriptome datasetsLaura Puente-Santamaría, Lucia Sanchez-Gonzalez, Ricardo Ramos-Ruiz, et al.Pageof 5