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Journal of Chemical Information and Modeling|February 17, 2026
IALA-LNN: Deep Learning for Peptide Retention Time Prediction Based on Improved Artificial Lemming Algorithm-Optimized Liquid Neural NetworksYu Chen, Lun Zhu, Sen Yang
BMC Bioinformatics|July 21, 2025
BPFun: a deep learning framework for bioactive peptide function prediction using multi-label strategy by transformer-driven and sequence rich intrinsic informationLun Zhu, Hao Sun, Sen Yang
International Journal of Biological Macromolecules|April 30, 2025
BioSeq_Ksite: Multi-perspective feature-driven prediction of protein succinylation based on an adaptive attention module with SSBCE loss strategyLun Zhu, Ziqi Zhang, Sen Yang
Interdisciplinary Sciences, Computational Life Sciences|December 23, 2024
EnDM-CPP: A Multi-view Explainable Framework Based on Deep Learning and Machine Learning for Identifying Cell-Penetrating Peptides with Transformers and Analyzing Sequence InformationLun Zhu, Zehua Chen, Sen Yang
International Journal of Biological Macromolecules|October 2, 2024
DeepAIP: Deep learning for anti-inflammatory peptide prediction using pre-trained protein language model features based on contextual self-attention networkLun Zhu, Qingguo Yang, Sen Yang
International Journal of Molecular Sciences|January 8, 2025
LncSL: A Novel Stacked Ensemble Computing Tool for Subcellular Localization of lncRNA by Amino Acid-Enhanced Features and Two-Stage Automated Selection StrategyLun Zhu, Hong Chen, Sen Yang
Interdisciplinary Sciences, Computational Life Sciences|June 3, 2026
NphosNet: Predicting Protein N-Phosphorylation Sites via xLSTM and Enhanced PLM Features with a Weighted Three-Channel Cross-Attention MechanismLun Zhu, Yiyu Lin, Sen Yang
Journal of Chemical Information and Modeling|July 8, 2026
DeepDPM: A Deep Learning Method for MoRFs Prediction Based on Wavelet Transform and Dynamic Convolutional Attention MechanismHuaiyang Sun, Lun Zhu, Yan Wang, et al.
Computers in Biology and Medicine|July 22, 2022
ACP-check: An anticancer peptide prediction model based on bidirectional long short-term memory and multi-features fusion strategyLun Zhu, Chenyang Ye, Xuemei Hu, et al.
BMC Bioinformatics|June 4, 2026
UniPTMs: a unified multi-type PTM site prediction model via master-slave architecture-based multi-stage fusion strategy and hierarchical contrastive lossJiahui Wu, Yiyu Lin, Peng Shen, et al.
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