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Methods in Molecular Biology (Clifton, N.J.)|July 7, 2022
Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAsChao Zeng, Atsushi Takeda, Kotaro Sekine, et al.Oncogene|July 2, 2025
Integrative epigenome and transcriptome analyses reveal transcriptional programs differentially regulated by ASCL1 and NEUROD1 in small cell lung cancerHiroshi Takumida, Akira Saito, Yugo Okabe, et al.RNA (New York, N.Y.)|June 25, 2026
SERIPH: A Two-Step Extraction Protocol for Selective Enrichment of Semi-Extractable RNAsNaoko Fujiwara, Junichi Iwakiri, Chao Zeng, et al.Briefings in Bioinformatics|June 28, 2013
Fighting against uncertainty: an essential issue in bioinformaticsMichiaki HamadaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 6, 2012
Direct updating of an RNA base-pairing probability matrix with marginal probability constraintsMichiaki HamadaMethods in Molecular Biology (Clifton, N.J.)|January 12, 2015
RNA secondary structure prediction from multi-aligned sequencesMichiaki HamadaGene|April 14, 2024
Identification of a novel RNA transcript TISPL upregulated by stressors that stimulate ATF4Yutaro Wakabayashi, Aika Shimono, Yuki Terauchi, et al.BMC Bioinformatics|March 16, 2020
MoAIMS: efficient software for detection of enriched regions of MeRIP-SeqYiqian Zhang, Michiaki HamadaBriefings in Functional Genomics|January 29, 2019
Computational approaches for alternative and transient secondary structures of ribonucleic acidsTsukasa Fukunaga, Michiaki HamadaPageof 68