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NAR Genomics and Bioinformatics|November 4, 2021
Clone decomposition based on mutation signatures provides novel insights into mutational processesTaro Matsutani, Michiaki HamadaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 9, 2012
A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)Michiaki Hamada, Kiyoshi AsaiMethods in Molecular Biology (Clifton, N.J.)|March 19, 2014
RNA structural alignments, part II: non-Sankoff approaches for structural alignmentsKiyoshi Asai, Michiaki HamadaBioinformatics Advances|January 26, 2023
LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methodsTsukasa Fukunaga, Michiaki HamadaFrontiers in Genetics|March 18, 2021
Identification of m6A-Associated RNA Binding Proteins Using an Integrative Computational FrameworkYiqian Zhang, Michiaki HamadaBriefings in Bioinformatics|May 26, 2023
Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discoveryKengo Sato, Michiaki HamadaNucleic Acids Research|July 16, 2026
The Lomb-Scargle periodogram-based differentially expressed gene detection along pseudotimeHitoshi Iuchi, Michiaki HamadaBMC Bioinformatics|January 2, 2019
DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learningYiqian Zhang, Michiaki HamadaBioinformatics Advances|January 26, 2023
Prediction of RNA-protein interactions using a nucleotide language modelKeisuke Yamada, Michiaki HamadaBioinformatics (Oxford, England)|May 2, 2017
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approachTsukasa Fukunaga, Michiaki HamadaPageof 68