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Bioinformatics (Oxford, England)|January 1, 2017
Training alignment parameters for arbitrary sequencers with LAST-TRAINMichiaki Hamada, Yukiteru Ono, Kiyoshi Asai, et al.
Nature Communications|October 17, 2024
The MTR4/hnRNPK complex surveils aberrant polyadenylated RNAs with multiple exonsKenzui Taniue, Anzu Sugawara, Chao Zeng, et al.
Pediatric Research|March 16, 2022
G0S2 regulates innate immunity in Kawasaki disease via lncRNA HSD11B1-AS1Mako Okabe, Shinya Takarada, Nariaki Miyao, et al.
Computational and Structural Biotechnology Journal|November 13, 2023
Probiotic responder identification in cross-over trials for constipation using a Bayesian statistical model considering lags between intake and effect periodsShion Hosoda, Yuichiro Nishimoto, Yohsuke Yamauchi, et al.
Bioinformatics (Oxford, England)|December 20, 2008
Prediction of RNA secondary structure using generalized centroid estimatorsMichiaki Hamada, Hisanori Kiryu, Kengo Sato, et al.
Bioinformatics (Oxford, England)|May 30, 2009
Predictions of RNA secondary structure by combining homologous sequence informationMichiaki Hamada, Kengo Sato, Hisanori Kiryu, et al.
Mobile DNA|April 4, 2025
REPrise: de novo interspersed repeat detection using inexact seedingAtsushi Takeda, Daisuke Nonaka, Yuta Imazu, et al.
Bioinformatics (Oxford, England)|August 16, 2006
Mining frequent stem patterns from unaligned RNA sequencesMichiaki Hamada, Koji Tsuda, Taku Kudo, et al.
Bioinformatics (Oxford, England)|October 8, 2009
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs scoreMichiaki Hamada, Kengo Sato, Hisanori Kiryu, et al.
Bioinformatics (Oxford, England)|June 21, 2011
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingKengo Sato, Yuki Kato, Michiaki Hamada, et al.
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