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Bioinformatics (Oxford, England)|October 13, 2012
TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysisYu Lin, Vaibhav Rajan, Bernard M E MoretIEEE/ACM Transactions on Computational Biology and Bioinformatics|December 21, 2011
A metric for phylogenetic trees based on matchingYu Lin, Vaibhav Rajan, Bernard M E MoretJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 10, 2010
Sorting signed permutations by inversions in O(nlogn) timeKrister M Swenson, Vaibhav Rajan, Yu Lin, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 15, 2009
Hurdles and sorting by inversions: combinatorial, statistical, and experimental resultsKrister M Swenson, Yu Lin, Vaibhav Rajan, et al.BMC Bioinformatics|February 4, 2010
Estimating true evolutionary distances under rearrangements, duplications, and lossesYu Lin, Vaibhav Rajan, Krister M Swenson, et al.BMC Bioinformatics|February 4, 2010
Heuristics for the inversion median problemVaibhav Rajan, Andrew Wei Xu, Yu Lin, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 9, 2011
A new genomic evolutionary model for rearrangements, duplications, and losses that applies across eukaryotes and prokaryotesYu Lin, Bernard M E MoretBioinformatics (Oxford, England)|July 1, 2008
Estimating true evolutionary distances under the DCJ modelYu Lin, Bernard M E MoretJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 18, 2014
An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate GenesMingfu Shao, Yu Lin, Bernard M E MoretPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 21, 2013
Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotesYu Lin, Fei Hu, Jijun Tang, et al.Pageof 1,052