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Nucleic Acids Research|May 31, 2022
Detecting TAD-like domains from RNA-associated interactionsYu Wei Zhang, Lingxi Chen, Shuai Cheng Li
Nucleic Acids Research|November 14, 2022
Incorporating cell hierarchy to decipher the functional diversity of single cellsLingxi Chen, Shuai Cheng Li
BMC Bioinformatics|December 29, 2019
DeepMF: deciphering the latent patterns in omics profiles with a deep learning methodLingxi Chen, Jiao Xu, Shuai Cheng Li
Computational and Structural Biotechnology Journal|June 9, 2025
Topology entropy: Enhancing graph partitioning for TAD identification and single-cell clusteringQiushi Liang, Shengjie Zhao, Lingxi Chen, et al.
NAR Genomics and Bioinformatics|September 21, 2022
SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolutionJingwan Wang, Shiying Li, Lingxi Chen, et al.
Nucleic Acids Research|August 17, 2021
SpecHap: a diploid phasing algorithm based on spectral graph theoryYonghan Yu, Lingxi Chen, Xinyao Miao, et al.
BMC Genomics|November 19, 2020
I-Impute: a self-consistent method to impute single cell RNA sequencing dataXikang Feng, Lingxi Chen, Zishuai Wang, et al.
Nucleic Acids Research|May 12, 2020
Oviz-Bio: a web-based platform for interactive cancer genomics data visualizationWenlong Jia, Hechen Li, Shiying Li, et al.
Nature Communications|September 8, 2023
Deciphering complex breakage-fusion-bridge genome rearrangements with AmbigramChaohui Li, Lingxi Chen, Guangze Pan, et al.
Briefings in Bioinformatics|January 30, 2023
SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistencyJuhua Pu, Bingchen Wang, Xingwu Liu, et al.
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