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BMC Genomics|May 11, 2018
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic treesUyen Mai, Siavash MirarabBioinformatics (Oxford, England)|October 11, 2011
FastSP: linear time calculation of alignment accuracySiavash Mirarab, Tandy WarnowBioinformatics (Oxford, England)|February 8, 2021
SODA: multi-locus species delimitation using quartet frequenciesMaryam Rabiee, Siavash MirarabGenes|March 3, 2018
Testing for Polytomies in Phylogenetic Species Trees Using Quartet FrequenciesErfan Sayyari, Siavash MirarabMolecular Biology and Evolution|September 4, 2020
Log Transformation Improves Dating of PhylogeniesUyen Mai, Siavash MirarabMolecular Biology and Evolution|October 6, 2022
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species TreesChao Zhang, Siavash MirarabSystematic Biology|July 11, 2019
INSTRAL: Discordance-Aware Phylogenetic Placement Using Quartet ScoresMaryam Rabiee, Siavash MirarabAlgorithms for Molecular Biology : AMB|March 14, 2024
Median quartet tree search algorithms using optimal subtree prune and regraftShayesteh Arasti, Siavash MirarabMethods in Molecular Biology (Clifton, N.J.)|April 29, 2024
Analyses of Nuclear Reads Obtained Using Genome SkimmingSiavash Mirarab, Vineet BafnaBioinformatics (Oxford, England)|May 7, 2011
Boulder ALignment Editor (ALE): a web-based RNA alignment toolJesse Stombaugh, Jeremy Widmann, Daniel McDonald, et al.Pageof 102