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Biology Direct|December 6, 2008
Activating and inhibiting connections in biological network dynamicsDaniel McDonald, Laura Waterbury, Rob Knight, et al.
Biorxiv : the Preprint Server for Biology|March 10, 2025
Coalescent-based branch length estimation improves dating of species treesYasamin Tabatabaee, Santiago Claramunt, Siavash Mirarab
IEEE/ACM Transactions on Computational Biology and Bioinformatics|October 5, 2017
Species Tree Estimation Using ASTRAL: How Many Genes Are Enough?Shubhanshu Shekhar, Sebastien Roch, Siavash Mirarab
Systematic Biology|May 22, 2026
Coalescent-based branch length estimation improves dating of species treesYasamin Tabatabaee, Santiago Claramunt, Siavash Mirarab
BMC Genomics|January 10, 2015
BBCA: Improving the scalability of *BEAST using random binningThéo Zimmermann, Siavash Mirarab, Tandy Warnow
Algorithms for Molecular Biology : AMB|January 28, 2012
MRL and SuperFine+MRL: new supertree methodsNam Nguyen, Siavash Mirarab, Tandy Warnow
Bioinformatics (Oxford, England)|September 13, 2019
TADA: phylogenetic augmentation of microbiome samples enhances phenotype classificationErfan Sayyari, Ban Kawas, Siavash Mirarab
Bioinformatics (Oxford, England)|March 24, 2019
ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelizationJohn Yin, Chao Zhang, Siavash Mirarab
Biorxiv : the Preprint Server for Biology|June 10, 2024
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIESAnshu Gupta, Siavash Mirarab, Yatish Turakhia
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