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Plos Computational Biology|April 1, 2022
Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencodersYuge Wang, Hongyu ZhaoG3 (Bethesda, Md.)|February 8, 2026
A Comprehensive Benchmarking Study on Computational Tools for Cross-omics Label Transfer from Single-cell RNA to ATAC DataYuge Wang, Hongyu ZhaoBioinformatics (Oxford, England)|June 30, 2022
ResPAN: a powerful batch correction model for scRNA-seq data through residual adversarial networksYuge Wang, Tianyu Liu, Hongyu ZhaoFrontiers in Genetics|December 30, 2022
Benchmarking automated cell type annotation tools for single-cell ATAC-seq dataYuge Wang, Xingzhi Sun, Hongyu ZhaoAdvanced Science (Weinheim, Baden-Wurttemberg, Germany)|March 23, 2026
Evaluating the Utilities of Foundation Models in Single-Cell Data AnalysisTianyu Liu, Kexing Li, Yuge Wang, et al.Biorxiv : the Preprint Server for Biology|March 11, 2024
Evaluating the Utilities of Foundation Models in Single-cell Data AnalysisTianyu Liu, Kexing Li, Yuge Wang, et al.Genome Biology|December 19, 2023
scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profilesBiqing Zhu, Yuge Wang, Li-Ting Ku, et al.Briefings in Bioinformatics|November 26, 2024
CosGeneGate selects multi-functional and credible biomarkers for single-cell analysisTianyu Liu, Wenxin Long, Zhiyuan Cao, et al.Journal of the Mechanical Behavior of Biomedical Materials|June 6, 2021
Multi-tip indenter tool scratch behavior of glass-ceramicsZhongjun Qiu, Yuge WangPageof 128