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Quantitative Biology (Beijing, China)|February 12, 2026
Loc4Lnc: Accurate prediction of long noncoding RNA subcellular localization via enhanced RNA sequence representationYujia Cheng, Xiaoyong Pan, Yang YangBriefings in Bioinformatics|March 13, 2025
DRAG: design RNAs as hierarchical graphs with reinforcement learningYichong Li, Xiaoyong Pan, Hongbin Shen, et al.RNA (New York, N.Y.)|September 21, 2019
CRIP: predicting circRNA-RBP-binding sites using a codon-based encoding and hybrid deep neural networksKaiming Zhang, Xiaoyong Pan, Yang Yang, et al.Briefings in Bioinformatics|July 23, 2021
Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese networkHehe Wu, Xiaoyong Pan, Yang Yang, et al.BMC Genomics|December 10, 2020
RBPsuite: RNA-protein binding sites prediction suite based on deep learningXiaoyong Pan, Yi Fang, Xianfeng Li, et al.Bioinformatics (Oxford, England)|February 21, 2018
The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifierZhen Cao, Xiaoyong Pan, Yang Yang, et al.Wiley Interdisciplinary Reviews. RNA|May 9, 2019
Recent methodology progress of deep learning for RNA-protein interaction predictionXiaoyong Pan, Yang Yang, Chun-Qiu Xia, et al.Molecular Biosystems|June 2, 2015
PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid featuresXiaoyong Pan, Kai XiongComputers in Biology and Medicine|February 25, 2024
Decoding protein binding landscape on circular RNAs with base-resolution transformer modelsHehe Wu, Xiaojian Liu, Yi Fang, et al.Iscience|October 13, 2019
Inferring Disease-Associated MicroRNAs Using Semi-supervised Multi-Label Graph Convolutional NetworksXiaoyong Pan, Hong-Bin ShenPageof 1,652