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Nature Computational Science|January 4, 2024
Decoding reward-curiosity conflict in decision-making from irrational behaviorsYuki Konaka, Honda NaokiPlos Computational Biology|August 10, 2017
Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projectionHonda NaokiDevelopment, Growth & Differentiation|February 29, 2020
Somite boundary determination in normal and clock-less vertebrate embryosHonda Naoki, Takaaki MatsuiNeuroscience Research|January 9, 2026
Gradual proactive regulation of body state by reinforcement learning of homeostasisMana Fujiwara, Honda NaokiProgress in Molecular Biology and Translational Science|February 25, 2014
Mathematical modeling of neuronal polarization during developmentHonda Naoki, Shin IshiiNPJ Systems Biology and Applications|November 22, 2023
Few-shot prediction of amyloid β accumulation from mainly unpaired data on biomarker candidatesYuichiro Yada, Honda NaokiNPJ Digital Medicine|May 11, 2026
Decomposing heterogeneity in disease progression speeds and pathwaysYuichiro Yada, Honda NaokiBiorxiv : the Preprint Server for Biology|June 12, 2026
Spatially resolved mapping of tau amplification rates via differentiable simulation of prion-like propagationYohei Kondo, Honda Naoki, Iscience|January 3, 2023
Adaptive discrimination between harmful and harmless antigens in the immune system by predictive codingKana Yoshido, Honda NaokiNeural Networks : the Official Journal of the International Neural Network Society|July 19, 2011
A multiphysical model of cell migration integrating reaction-diffusion, membrane and cytoskeletonSeigo Nonaka, Honda Naoki, Shin IshiiPageof 5