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Bioinformatics (Oxford, England)|November 7, 2012
PBSIM: PacBio reads simulator--toward accurate genome assemblyYukiteru Ono, Kiyoshi Asai, Michiaki Hamada
Bioinformatics (Oxford, England)|September 25, 2020
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scoresYukiteru Ono, Kiyoshi Asai, Michiaki Hamada
NAR Genomics and Bioinformatics|December 5, 2022
PBSIM3: a simulator for all types of PacBio and ONT long readsYukiteru Ono, Michiaki Hamada, Kiyoshi Asai
Bioinformatics (Oxford, England)|March 27, 2015
Learning chromatin states with factorized information criteriaMichiaki Hamada, Yukiteru Ono, Ryohei Fujimaki, et al.
Bioinformatics (Oxford, England)|January 1, 2017
Training alignment parameters for arbitrary sequencers with LAST-TRAINMichiaki Hamada, Yukiteru Ono, Kiyoshi Asai, et al.
Methods in Molecular Biology (Clifton, N.J.)|January 27, 2023
Rtools: A Web Server for Various Secondary Structural Analyses on Single RNA SequencesYukiteru Ono, Kiyoshi Asai
Nucleic Acids Research|May 1, 2016
Rtools: a web server for various secondary structural analyses on single RNA sequencesMichiaki Hamada, Yukiteru Ono, Hisanori Kiryu, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 9, 2012
A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)Michiaki Hamada, Kiyoshi Asai
Methods in Molecular Biology (Clifton, N.J.)|March 19, 2014
RNA structural alignments, part II: non-Sankoff approaches for structural alignmentsKiyoshi Asai, Michiaki Hamada
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