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Journal of Cheminformatics|November 24, 2017
Efficient conformational ensemble generation of protein-bound peptidesYumeng Yan, Di Zhang, Sheng-You HuangNucleic Acids Research|March 6, 2018
Determination of an effective scoring function for RNA-RNA interactions with a physics-based double-iterative methodYumeng Yan, Zeyu Wen, Di Zhang, et al.Nucleic Acids Research|May 19, 2017
HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategyYumeng Yan, Di Zhang, Pei Zhou, et al.Bioinformatics (Oxford, England)|October 14, 2017
RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoringYumeng Yan, Sheng-You HuangMethods in Molecular Biology (Clifton, N.J.)|July 5, 2020
Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK WebserverYumeng Yan, Sheng-You HuangBriefings in Bioinformatics|March 11, 2021
Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexesYumeng Yan, Sheng-You HuangBMC Bioinformatics|December 26, 2019
Pushing the accuracy limit of shape complementarity for protein-protein dockingYumeng Yan, Sheng-You HuangBriefings in Bioinformatics|November 28, 2022
DeepHomo2.0: improved protein-protein contact prediction of homodimers by transformer-enhanced deep learningPeicong Lin, Yumeng Yan, Sheng-You HuangNucleic Acids Research|May 31, 2018
HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetryYumeng Yan, Huanyu Tao, Sheng-You HuangProteins|December 28, 2016
Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein dockingYumeng Yan, Zeyu Wen, Xinxiang Wang, et al.Pageof 391