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Frontiers in Cell and Developmental Biology|September 5, 2022
Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variantsWujuan Zhong, Weifang Liu, Jiawen Chen, et al.
Communications Biology|July 9, 2024
SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH dataHongyu Yu, Daiqing Wu, Shreya Mishra, et al.
BMC Genetics|September 8, 2017
LAIT: a local ancestry inference toolkitDaniel Hui, Zhou Fang, Jerome Lin, et al.
Computational and Structural Biotechnology Journal|January 12, 2024
HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasetsJonathan Rosen, Lindsay Lee, Armen Abnousi, et al.
Biorxiv : the Preprint Server for Biology|December 15, 2025
Accurate and robust 3D genome feature discovery from multiplexed DNA FISHHongyu Yu, Lingbo Zhou, Liangqi Xie, et al.
Plos One|April 30, 2020
SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA TranscriptionXiaoyu Yang, Seth Bergenholtz, Lenka Maliskova, et al.
Genetic Epidemiology|September 29, 2020
TWO-SIGMA: A novel two-component single cell model-based association method for single-cell RNA-seq dataEric Van Buren, Ming Hu, Chen Weng, et al.
Nature|April 13, 2012
Topological domains in mammalian genomes identified by analysis of chromatin interactionsJesse R Dixon, Siddarth Selvaraj, Feng Yue, et al.
Computational and Structural Biotechnology Journal|June 10, 2022
SnapHiC2: A computationally efficient loop caller for single cell Hi-C dataXiaoqi Li, Lindsay Lee, Armen Abnousi, et al.
Briefings in Bioinformatics|March 24, 2022
TWO-SIGMA-G: a new competitive gene set testing framework for scRNA-seq data accounting for inter-gene and cell-cell correlationEric Van Buren, Ming Hu, Liang Cheng, et al.
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