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Quantitative Biology (Beijing, China)|August 29, 2019
Modeling and analysis of RNA-seq data: a review from a statistical perspectiveWei Vivian Li, Jingyi Jessica LiSTAR Protocols|August 12, 2021
Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysisNan Miles Xi, Jingyi Jessica LiQuantitative Biology (Beijing, China)|February 12, 2026
Spatial transcriptomics iterative hierarchical clustering (stIHC): A novel method for identifying spatial gene co-expression modulesCatherine Higgins, Jingyi Jessica Li, Michelle CareyBiorxiv : the Preprint Server for Biology|May 10, 2023
scDEED: a statistical method for detecting dubious 2D single-cell embeddings and optimizing t-SNE and UMAP hyperparametersLucy Xia, Christy Lee, Jingyi Jessica LiNature Communications|November 19, 2023
scReadSim: a single-cell RNA-seq and ATAC-seq read simulatorGuanao Yan, Dongyuan Song, Jingyi Jessica LiJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 6, 2023
A Python Package itca for Information-Theoretic Classification Accuracy: A Criterion That Guides Data-Driven Combination of Ambiguous Outcome Labels in Multiclass ClassificationChihao Zhang, Shihua Zhang, Jingyi Jessica LiScience Advances|February 10, 2018
Neyman-Pearson classification algorithms and NP receiver operating characteristicsXin Tong, Yang Feng, Jingyi Jessica LiNature Communications|February 26, 2024
Statistical method scDEED for detecting dubious 2D single-cell embeddings and optimizing t-SNE and UMAP hyperparametersLucy Xia, Christy Lee, Jingyi Jessica LiBiorxiv : the Preprint Server for Biology|September 11, 2023
ClipperQTL: ultrafast and powerful eGene identification methodHeather J Zhou, Xinzhou Ge, Jingyi Jessica LiGenome Biology|July 16, 2025
ClipperQTL: ultrafast and powerful eGene identification methodHeather J Zhou, Xinzhou Ge, Jingyi Jessica LiPageof 21