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BMC Bioinformatics|February 8, 2017
Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elementsQuan Zhang, Yuzhen YeRNA (New York, N.Y.)|May 19, 2016
Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic dataYuzhen Ye, Quan ZhangPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 17, 2011
Artificial functional difference between microbial communities caused by length difference of sequencing readsQuan Zhang, Thomas G Doak, Yuzhen YeNucleic Acids Research|December 10, 2013
Expanding the catalog of cas genes with metagenomesQuan Zhang, Thomas G Doak, Yuzhen YeGenome Biology|May 1, 2013
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomesQuan Zhang, Mina Rho, Haixu Tang, et al.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine|November 22, 2011
Identification and Quantification of Abundant Species from Pyrosequences of 16S rRNA by Consensus AlignmentYuzhen YeInternational Journal of Molecular Sciences|September 9, 2014
Identification of diversity-generating retroelements in human microbiomesYuzhen YeBioinformatics (Oxford, England)|August 31, 2015
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysisYuzhen Ye, Haixu TangNucleic Acids Research|May 4, 2019
MyDGR: a server for identification and characterization of diversity-generating retroelementsFatemeh Sharifi, Yuzhen YeNucleic Acids Research|December 14, 2021
Identification and classification of reverse transcriptases in bacterial genomes and metagenomesFatemeh Sharifi, Yuzhen YePageof 279