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The Journal of Chemical Physics|November 3, 2016
A one-way shooting algorithm for transition path sampling of asymmetric barriersZ Faidon Brotzakis, Peter G BolhuisThe Journal of Chemical Physics|November 10, 2019
Approximating free energy and committor landscapes in standard transition path sampling using virtual interface exchangeZ Faidon Brotzakis, Peter G BolhuisProceedings of the National Academy of Sciences of the United States of America|December 30, 2020
A method of incorporating rate constants as kinetic constraints in molecular dynamics simulationsZ Faidon Brotzakis, Michele Vendruscolo, Peter G BolhuisThe Journal of Chemical Physics|August 15, 2023
Optimizing molecular potential models by imposing kinetic constraints with path reweightingPeter G Bolhuis, Z Faidon Brotzakis, Bettina G KellerPhysical Chemistry Chemical Physics : PCCP|July 14, 2017
Stability and growth mechanism of self-assembling putative antifreeze cyclic peptidesZ Faidon Brotzakis, Mascha Gehre, Ilja K Voets, et al.Physical Chemistry Chemical Physics : PCCP|February 23, 2018
Water structure and dynamics in the hydration layer of a type III anti-freeze proteinZ Faidon Brotzakis, Ilja K Voets, Huib J Bakker, et al.FEBS Open Bio|December 23, 2022
Guide for determination of protein structural ensembles by combining cryo-EM data with metadynamicsZ Faidon BrotzakisMethods in Molecular Biology (Clifton, N.J.)|March 21, 2024
Cryo-electron Microscopy and Molecular Modeling Methods to Characterize the Dynamics of Tau Bound to MicrotubulesZ Faidon BrotzakisJournal of Chemical Theory and Computation|December 18, 2018
Enhanced Sampling of Protein Conformational Transitions via Dynamically Optimized Collective VariablesZ Faidon Brotzakis, Michele ParrinelloChemical Science|July 19, 2021
Determination of intermediate state structures in the opening pathway of SARS-CoV-2 spike using cryo-electron microscopyZ Faidon Brotzakis, Thomas Löhr, Michele VendruscoloPageof 13