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Iscience|December 17, 2021
Changes in gene-gene interactions associated with cancer onset and progression are largely independent of changes in gene expressionZainab Arshad, John F McDonaldSTAR Protocols|June 9, 2022
A computational approach to generate highly conserved gene co-expression networks with RNA-seq dataZainab Arshad, John F McDonaldMolecular Biology and Evolution|January 6, 2025
Adaptive Significance of Non-coding RNAs: Insights from Cancer BiologyJohn F McDonaldJournal of Zhejiang University. Science|April 15, 2004
The Q theory of investment, the capital asset pricing model, and asset valuation: a synthesisJohn F McDonaldIn Vivo (Athens, Greece)|June 29, 2011
Subcutenous xenografts of human T-lineage acute lymphoblastic leukemia Jurkat cells in nude miceRoman Mezencev, John F McDonaldBioinformatics (Oxford, England)|February 14, 2003
LTR_STRUC: a novel search and identification program for LTR retrotransposonsEugene M McCarthy, John F McDonaldNucleic Acids Research|January 31, 2012
R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing dataVinay K Mittal, John F McDonaldBMC Medical Genomics|August 31, 2017
De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significanceVinay K Mittal, John F McDonaldGenome Biology|March 9, 2004
Long terminal repeat retrotransposons of Mus musculusEugene M McCarthy, John F McDonaldBMC Medical Genomics|July 17, 2015
Integrated sequence and expression analysis of ovarian cancer structural variants underscores the importance of gene fusion regulationVinay K Mittal, John F McDonaldPageof 11