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Journal of Virology|December 9, 2016
Emergence of a Viral RNA Polymerase Variant during Gene Copy Number Amplification Promotes Rapid Evolution of Vaccinia VirusKelsey R Cone, Zev N Kronenberg, Mark Yandell, et al.Plos Computational Biology|May 31, 2022
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivarErik Garrison, Zev N Kronenberg, Eric T Dawson, et al.Plant Biotechnology Journal|February 22, 2023
Deep haplotype analyses of target-site resistance locus ACCase in blackgrass enabled by pool-based amplicon sequencingSonja Kersten, Fernando A Rabanal, Johannes Herrmann, et al.Plos Computational Biology|December 2, 2015
Wham: Identifying Structural Variants of Biological ConsequenceZev N Kronenberg, Edward J Osborne, Kelsey R Cone, et al.Nature Communications|September 19, 2019
Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variantsYaoxi He, Xin Luo, Bin Zhou, et al.Genome Research|June 10, 2018
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotationIan T Fiddes, Joel Armstrong, Mark Diekhans, et al.Cell|October 3, 2017
Genomic Patterns of De Novo Mutation in Simplex AutismTychele N Turner, Bradley P Coe, Diane E Dickel, et al.Genome Research|November 30, 2016
Discovery and genotyping of structural variation from long-read haploid genome sequence dataJohn Huddleston, Mark J P Chaisson, Karyn Meltz Steinberg, et al.Genome Research|November 3, 2016
Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 regionKiana Mohajeri, Stuart Cantsilieris, John Huddleston, et al.Annals of Human Genetics|November 12, 2019
Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long readsMitchell R Vollger, Glennis A Logsdon, Peter A Audano, et al.Pageof 2