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Plos One|June 28, 2016
Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsZeynep Kurkcuoglu, Pemra DorukerPlos One|July 22, 2016
Correction: Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsZeynep Kurkcuoglu, Pemra DorukerJournal of Chemical Theory and Computation|August 6, 2016
ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic ResolutionZeynep Kurkcuoglu, Ivet Bahar, Pemra DorukerProteins|November 13, 2008
Collective dynamics of the ribosomal tunnel revealed by elastic network modelingOzge Kurkcuoglu, Zeynep Kurkcuoglu, Pemra Doruker, et al.Molecular Informatics|July 29, 2016
Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and HumanZeynep Kurkcuoglu, Gulgun Ural, E Demet Akten, et al.Biophysical Journal|July 21, 2015
How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase DynamicsZeynep Kurkcuoglu, Doga Findik, Ebru Demet Akten, et al.Plos Computational Biology|October 3, 2012
Coupling between catalytic loop motions and enzyme global dynamicsZeynep Kurkcuoglu, Ahmet Bakan, Duygu Kocaman, et al.Plos One|April 25, 2017
Conformational dynamics of bacterial trigger factor in apo and ribosome-bound statesMehmet Tarik Can, Zeynep Kurkcuoglu, Gokce Ezeroglu, et al.Biochemistry|January 15, 2008
Dimerization affects collective dynamics of triosephosphate isomeraseSertan Cansu, Pemra DorukerJournal of Chemical Information and Modeling|March 27, 2019
Protein-Ligand Complexes as Constrained Dynamical SystemsBurak T Kaynak, Pemra DorukerPageof 6