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BMC Evolutionary Biology|June 3, 2006
Computing Ka and Ks with a consideration of unequal transitional substitutionsZhang Zhang, Jun Li, Jun YuJournal of Molecular Evolution|March 25, 2009
Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineageJun Li, Zhang Zhang, Søren Vang, et al.Genomics, Proteomics & Bioinformatics|February 14, 2013
Does the genetic code have a eukaryotic origin?Zhang Zhang, Jun YuBMC Bioinformatics|March 23, 2012
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significanceZhang Zhang, Jun Li, Peng Cui, et al.Biology Direct|November 10, 2010
Modeling compositional dynamics based on GC and purine contents of protein-coding sequencesZhang Zhang, Jun YuGenomics, Proteomics & Bioinformatics|November 28, 2006
Evaluation of six methods for estimating synonymous and nonsynonymous substitution ratesZhang Zhang, Jun YuGenomics, Proteomics & Bioinformatics|June 7, 2011
On the organizational dynamics of the genetic codeZhang Zhang, Jun YuGenomics, Proteomics & Bioinformatics|October 23, 2012
The pendulum model for genome compositional dynamics: from the four nucleotides to the twenty amino acidsZhang Zhang, Jun YuGenomics, Proteomics & Bioinformatics|May 29, 2007
KaKs_Calculator: calculating Ka and Ks through model selection and model averagingZhang Zhang, Jun Li, Xiao-Qian Zhao, et al.Mitochondrial DNA. Part A, DNA Mapping, Sequencing, and Analysis|January 29, 2015
Complete mitochondrial genome of Mugilogobius chulae (Perciformes: Gobiidae)Lei Cai, Ren Huang, Lu-Jun Yu, et al.Pageof 2,827