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Evolutionary Bioinformatics Online|December 2, 2022
Further Quantifying the Niche-Neutral Continuum of Human Digestive Tract Microbiomes with Near Neutral Model and Stochasticity AnalysisHongju Daisy Chen, Zhanshan Sam MaFrontiers in Microbiology|August 29, 2022
Niche-Neutral Continuum Seems to Explain the Global Niche Differentiation and Local Drift of the Human Digestive Tract MicrobiomeHongju Daisy Chen, Zhanshan Sam MaComputational and Structural Biotechnology Journal|June 17, 2021
<i>In silico</i> trio-biomarkers for bacterial vaginosis revealed by species dominance network analysisZhanshan Sam Ma, Aaron M EllisonMicrobial Ecology|November 9, 2025
Unraveling the Ecological Mechanisms Influencing the Structure and Composition of Lung Cancer MicrobiomesJiandong Mei, Lianwei Li, Zhanshan Sam MaMicrobiologyopen|August 18, 2025
Assessing Diversity Scaling in Lung Cancer Microbiome Across Individuals and Tissue TypesJiandong Mei, Yuting Qiao, Zhanshan Sam MaFEMS Microbiology Ecology|February 22, 2022
Microbiome-host-phylogeny relationships in animal gastrointestinal tract microbiomesZhanshan Sam Ma, Wendy Li, Peng ShiFrontiers in Microbiology|August 23, 2018
Assessing and Interpreting the Within-Body Biogeography of Human Microbiome DiversityZhanshan Sam Ma, Lianwei Li, Wendy LiFEMS Microbiology Letters|October 17, 2024
Species diversity and network diversity in the human lung cancer tissue microbiomesYuting Qiao, Jiandong Mei, Zhanshan Sam MaScientific Reports|April 4, 2020
Defining Individual-Level Genetic Diversity and Similarity ProfilesZhanshan Sam Ma, Lianwei Li, Ya-Ping ZhangMicrobiology Spectrum|February 4, 2025
Resilience of human gut microbiomes in autism spectrum disorder: measured using stiffness network analysisHongju Daisy Chen, Bin Yi, Zhanshan Sam MaPageof 9