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Journal of Visualized Experiments : Jove|October 11, 2021
A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic DataZhencheng Fang, Hongwei ZhouMicrobial Genomics|October 19, 2020
Identification of the conjugative and mobilizable plasmid fragments in the plasmidome using sequence signaturesZhencheng Fang, Hongwei ZhouFrontiers in Microbiology|February 22, 2021
VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino AcidsZhencheng Fang, Hongwei ZhouFrontiers in Microbiology|February 4, 2022
Corrigendum: VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino AcidsZhencheng Fang, Hongwei ZhouGigascience|August 11, 2022
DeePVP: Identification and classification of phage virion proteins using deep learningZhencheng Fang, Tao Feng, Hongwei Zhou, et al.Gigascience|August 5, 2024
MOBFinder: a tool for mobilization typing of plasmid metagenomic fragments based on a language modelTao Feng, Shufang Wu, Hongwei Zhou, et al.Microbial Genomics|February 11, 2025
Predicting the bacterial host range of plasmid genomes using the language model-based one-class support vector machine algorithmTao Feng, Xirao Chen, Shufang Wu, et al.Bioinformatics (Oxford, England)|August 12, 2021
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromesJie Tan, Zhencheng Fang, Shufang Wu, et al.Bioinformatics (Oxford, England)|February 25, 2020
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learningZhencheng Fang, Jie Tan, Shufang Wu, et al.Gigascience|June 21, 2019
PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learningZhencheng Fang, Jie Tan, Shufang Wu, et al.Pageof 3