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Journal of Chemical Information and Modeling|January 29, 2025
pLM4CPPs: Protein Language Model-Based Predictor for Cell Penetrating PeptidesNandan Kumar, Zhenjiao Du, Yonghui LiMethods in Molecular Biology (Clifton, N.J.)|July 2, 2025
Predicting Peptide Bioactivity Using the Unified Model Architecture UniDL4BioPepZhenjiao Du, Nandan Kumar, Yonghui LiThe Journal of Physical Chemistry. B|April 25, 2025
Membrane Selectivity Mechanisms of the Antimicrobial Peptide Snakin-Z Against Prokaryotic and Eukaryotic Membrane ModelsNandan Kumar, Zhenjiao Du, Raghavendra G Amachawadi, et al.International Journal of Biological Macromolecules|August 13, 2024
AlphaFold 2-based stacking model for protein solubility prediction and its transferability on seed storage proteinsHyukjin Kwon, Zhenjiao Du, Yonghui LiACS Omega|August 1, 2022
Comprehensive Evaluation and Comparison of Machine Learning Methods in QSAR Modeling of Antioxidant TripeptidesZhenjiao Du, Donghai Wang, Yonghui LiFood Chemistry|November 14, 2025
Solvent-dependent structural and dynamic behavior of α-gliadin in aqueous ethanol systems: Insights from molecular dynamics simulationsNandan Kumar, Yonghui LiBriefings in Bioinformatics|April 6, 2023
UniDL4BioPep: a universal deep learning architecture for binary classification in peptide bioactivityZhenjiao Du, Xingjian Ding, Yixiang Xu, et al.Journal of Agricultural and Food Chemistry|December 19, 2023
pLM4Alg: Protein Language Model-Based Predictors for Allergenic Proteins and PeptidesZhenjiao Du, Yixiang Xu, Changqi Liu, et al.Biorxiv : the Preprint Server for Biology|July 9, 2025
PepBERT: Lightweight language models for bioactive peptide representationZhenjiao Du, Doina Caragea, Xiaolong Guo, et al.Journal of Chemical Information and Modeling|March 4, 2025
FusionESP: Improved Enzyme-Substrate Pair Prediction by Fusing Protein and Chemical KnowledgeZhenjiao Du, Weimin Fu, Xiaolong Guo, et al.Pageof 47