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Briefings in Bioinformatics|November 1, 2018
dbCPM: a manually curated database for exploring the cancer passenger mutationsZhenyu Yue, Le Zhao, Junfeng Xia
Briefings in Bioinformatics|July 18, 2018
dbCID: a manually curated resource for exploring the driver indels in human cancerZhenyu Yue, Le Zhao, Na Cheng, et al.
Briefings in Bioinformatics|June 28, 2020
PredCID: prediction of driver frameshift indels in human cancerZhenyu Yue, Xinlu Chu, Junfeng Xia
IEEE Journal of Biomedical and Health Informatics|March 11, 2025
ExplainMIX: Explaining Drug Response Prediction in Directed Graph Neural Networks with Multi-Omics FusionYing Xiang, Xiaodi Li, Qian Gao, et al.
Peerj|September 10, 2024
CDMPred: a tool for predicting cancer driver missense mutations with high-quality passenger mutationsLihua Wang, Haiyang Sun, Zhenyu Yue, et al.
Oncotarget|March 3, 2016
Predicting hot spots in protein interfaces based on protrusion index, pseudo hydrophobicity and electron-ion interaction pseudopotential featuresJunfeng Xia, Zhenyu Yue, Yunqiang Di, et al.
Briefings in Bioinformatics|April 9, 2019
A feature-based approach to predict hot spots in protein-DNA binding interfacesSijia Zhang, Le Zhao, Chun-Hou Zheng, et al.
Artificial Intelligence in Medicine|March 8, 2025
DRExplainer: Quantifiable interpretability in drug response prediction with directed graph convolutional networkHaoyuan Shi, Tao Xu, Xiaodi Li, et al.
Peerj|December 9, 2015
Prediction of cancer cell sensitivity to natural products based on genomic and chemical propertiesZhenyu Yue, Wenna Zhang, Yongming Lu, et al.
BMC Medical Genetics|December 10, 2019
An analysis of mutational signatures of synonymous mutations across 15 cancer typesYannan Bin, Xiaojuan Wang, Le Zhao, et al.
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