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BMC Bioinformatics|September 30, 2020
pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMPWeiya Chen, Chun Yao, Yingzhong Guo, et al.
Plos One|October 27, 2015
Extending Protein Domain Boundary Predictors to Detect Discontinuous DomainsZhidong Xue, Richard Jang, Brandon Govindarajoo, et al.
Briefings in Bioinformatics|December 24, 2019
Deep learning for mining protein dataQiang Shi, Weiya Chen, Siqi Huang, et al.
Computational Biology and Chemistry|May 26, 2026
SPLiNet: Lightweight prediction of protein-RNA interaction sites by integrating a structure-aware protein language model with a dual-branch networkHongyang Ye, Changrong Zheng, Lei Wang, et al.
Briefings in Bioinformatics|March 9, 2023
NeuroPred-PLM: an interpretable and robust model for neuropeptide prediction by protein language modelLei Wang, Chen Huang, Mingxia Wang, et al.
Nucleic Acids Research|May 13, 2017
ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assemblyYan Wang, Jian Wang, Ruiming Li, et al.
Acta Crystallographica. Section D, Structural Biology|May 4, 2016
Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteinsYan Wang, Jouko Virtanen, Zhidong Xue, et al.
Bioinformatics (Oxford, England)|June 15, 2019
DNN-Dom: predicting protein domain boundary from sequence alone by deep neural networkQiang Shi, Weiya Chen, Siqi Huang, et al.
Interdisciplinary Sciences, Computational Life Sciences|June 1, 2026
ProtFormer-Site: Ultra-fast and Accurate Prediction of Protein-Protein Interaction Sites with Protein Language ModelLei Wang, Shali Dong, Han Zhang, et al.
Database : the Journal of Biological Databases and Curation|May 2, 2015
NeuroPep: a comprehensive resource of neuropeptidesYan Wang, Mingxia Wang, Sanwen Yin, et al.
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