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Journal of Chemical Information and Modeling|July 11, 2024
GOLEM: Automated and Robust Cryo-EM-Guided Ligand Docking with Explicit Water MoleculesZhiyu Zhao, Emad TajkhorshidJournal of Chemical Theory and Computation|June 3, 2026
Cytosolic K+ Binding to the Human Serotonin TransporterZhiyu Zhao, Emad TajkhorshidScientific Reports|December 22, 2019
Locking Two Rigid-body Bundles in an Outward-Facing Conformation: The Ion-coupling Mechanism in a LeuT-fold TransporterJing Li, Zhiyu Zhao, Emad TajkhorshidNature Communications|November 13, 2022
Lipid-mediated prestin organization in outer hair cell membranes and its implications in sound amplificationSepehr Dehghani-Ghahnaviyeh, Zhiyu Zhao, Emad TajkhorshidBiochemistry|July 29, 2025
An Orchestrated Interaction Network at the Binding Site of Human SERT Enables the Serotonin Occlusion and ImportZhiyu Zhao, Po-Chao Wen, Emad TajkhorshidProceedings of the National Academy of Sciences of the United States of America|July 12, 2023
Structures and membrane interactions of native serotonin transporter in complexes with psychostimulantsDongxue Yang, Zhiyu Zhao, Emad Tajkhorshid, et al.Proceedings of the National Academy of Sciences of the United States of America|January 9, 2020
Cryo-EM structures of a lipid-sensitive pentameric ligand-gated ion channel embedded in a phosphatidylcholine-only bilayerPramod Kumar, Yuhang Wang, Zhening Zhang, et al.Nature|April 26, 2019
Serotonin transporter-ibogaine complexes illuminate mechanisms of inhibition and transportJonathan A Coleman, Dongxue Yang, Zhiyu Zhao, et al.Trends in Biochemical Sciences|December 10, 2019
Computational Dissection of Membrane Transport at a Microscopic LevelTao Jiang, Po-Chao Wen, Noah Trebesch, et al.Biophysical Journal|June 14, 2020
Membrane Interactions of Cy3 and Cy5 Fluorophores and Their Effects on Membrane-Protein DynamicsKin Lam, Emad TajkhorshidPageof 46