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Bioinformatics (Oxford, England)|April 13, 2012
Ligand-binding site prediction using ligand-interacting and binding site-enriched protein trianglesZhong-Ru Xie, Ming-Jing HwangBMC Bioinformatics|June 8, 2010
An interaction-motif-based scoring function for protein-ligand dockingZhong-Ru Xie, Ming-Jing HwangMethods in Molecular Biology (Clifton, N.J.)|October 22, 2014
Methods for predicting protein-ligand binding sitesZhong-Ru Xie, Ming-Jing HwangBiochemical and Biophysical Research Communications|May 19, 2007
The role of microRNA in the delayed negative feedback regulation of gene expressionZhong-Ru Xie, Hsih-Te Yang, Wei-Chung Liu, et al.Nucleic Acids Research|April 24, 2013
LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sitesZhong-Ru Xie, Chuan-Kun Liu, Fang-Chih Hsiao, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 31, 2016
Elucidating the Functional Roles of Spatial Organization in Cross-Membrane Signal Transduction by a Hybrid Simulation MethodJiawen Chen, Zhong-Ru Xie, Yinghao WuFrontiers in Chemistry|March 3, 2020
A Pilot Study of All-Computational Drug Design Protocol-From Structure Prediction to Interaction AnalysisYifei Wu, Lei Lou, Zhong-Ru XieProteins|June 4, 2014
A multiscale model for simulating binding kinetics of proteins with flexible linkersJiawen Chen, Zhong-Ru Xie, Yinghao WuThe Journal of Chemical Physics|February 12, 2014
A coarse-grained model for the simulations of biomolecular interactions in cellular environmentsZhong-Ru Xie, Jiawen Chen, Yinghao WuMolecular Biosystems|November 20, 2015
Elucidating the general principles of cell adhesion with a coarse-grained simulation modelJiawen Chen, Zhong-Ru Xie, Yinghao WuPageof 10