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Journal of Computational Chemistry|June 22, 2023
Constant advance replicas method for locating minimum energy paths and transition statesZilin Song, Ye Ding, Jing HuangJournal of Chemical Theory and Computation|November 11, 2024
Identifying the Most Probable Transition Path with Constant Advance ReplicasZilin Song, You Xu, He Zhang, et al.International Journal of Molecular Sciences|February 10, 2024
Implementation and Validation of an OpenMM Plugin for the Deep Potential Representation of Potential EnergyYe Ding, Jing HuangThe Journal of Physical Chemistry Letters|January 10, 2024
DP/MM: A Hybrid Model for Zinc-Protein Interactions in Molecular DynamicsYe Ding, Jing HuangCurrent Opinion in Structural Biology|December 3, 2022
Data science techniques in biomolecular force field developmentYe Ding, Kuang Yu, Jing HuangACS Physical Chemistry Au|March 1, 2023
Binding Energy and Free Energy of Calcium Ion to Calmodulin EF-Hands with the Drude Polarizable Force FieldQiaozhu Tan, Ye Ding, Zongyang Qiu, et al.Iscience|May 11, 2026
The intrinsic disorder challenge for AlphaFold: A case study of G3BP1 and pathogenic peptideYucong Li, Zhiying Yao, Zilin Song, et al.Bioresource Technology|March 28, 2015
Anaerobic codigestion of pretreated wheat straw with cattle manure and analysis of the microbial communityZilin Song, Chao ZhangNature Materials|March 15, 2025
De novo design of self-assembling peptides with antimicrobial activity guided by deep learningHuayang Liu, Zilin Song, Yu Zhang, et al.Journal of Computer-Aided Molecular Design|January 22, 2020
Predicting partition coefficients of drug-like molecules in the SAMPL6 challenge with Drude polarizable force fieldsYe Ding, You Xu, Cheng Qian, et al.Pageof 513