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RNA (New York, N.Y.)|October 22, 2014
Diverse modes of evolutionary emergence and flux of conserved microRNA clustersJaaved Mohammed, Adam Siepel, Eric C Lai
Biorxiv : the Preprint Server for Biology|April 3, 2026
VINE: Variational inference for scalable Bayesian reconstruction of species and cell-lineage phylogeniesAdam Siepel, Rebecca Hassett, Stephen J Staklinski
Briefings in Bioinformatics|February 1, 2011
PHAST and RPHAST: phylogenetic analysis with space/time modelsMelissa J Hubisz, Katherine S Pollard, Adam Siepel
Genome Biology|September 24, 2021
ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screensElizabeth R Hutton, Christopher R Vakoc, Adam Siepel
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 30, 2010
Reconstructing histories of complex gene clusters on a phylogenyTomás Vinar, Brona Brejová, Giltae Song, et al.
Molecular Biology and Evolution|February 7, 2013
Inference of natural selection from interspersed genomic elements based on polymorphism and divergenceIlan Gronau, Leonardo Arbiza, Jaaved Mohammed, et al.
Nucleic Acids Research|October 27, 2023
Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cellsYixin Zhao, Lingjie Liu, Rebecca Hassett, et al.
American Journal of Human Genetics|May 20, 2014
Contrasting X-linked and autosomal diversity across 14 human populationsLeonardo Arbiza, Srikanth Gottipati, Adam Siepel, et al.
Nature Genetics|January 20, 2015
A method for calculating probabilities of fitness consequences for point mutations across the human genomeBrad Gulko, Melissa J Hubisz, Ilan Gronau, et al.
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