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BMC Bioinformatics|November 17, 2022
Modeling and cleaning RNA-seq data significantly improve detection of differentially expressed genesIgor V Deyneko, Orkhan N Mustafaev, Alexander А Tyurin, et al.
BMC Bioinformatics|November 15, 2022
iEnhancer-DCLA: using the original sequence to identify enhancers and their strength based on a deep learning frameworkMeng Liao, Jian-Ping Zhao, Jing Tian, et al.
BMC Bioinformatics|November 15, 2022
Grace-AKO: a novel and stable knockoff filter for variable selection incorporating gene network structuresPeixin Tian, Yiqian Hu, Zhonghua Liu, et al.
BMC Bioinformatics|November 15, 2022
Single sample pathway analysis in metabolomics: performance evaluation and applicationCecilia Wieder, Rachel P J Lai, Timothy M D Ebbels
BMC Bioinformatics|November 19, 2025
Talk2Biomodels: AI agent-based open-source LLM initiative for kinetic biological modelsLilija Wehling, Gurdeep Singh, Ahmad Wisnu Mulyadi, et al.
BMC Bioinformatics|November 19, 2025
Machine learning for genomic prediction of growth traits in aquaculture: a case study of the Australasian snapper (Chrysophrys auratus)Ze Chen, Julie Blommaert, Yi Mei, et al.
BMC Bioinformatics|November 19, 2025
MCLCBA: multi-view contrastive learning network for RNA methylation site predictionHonglei Wang, Xuesong Zhang, Yanjing Sun, et al.
BMC Bioinformatics|January 13, 2026
Limblab: pipeline for 3D analysis and visualisation of limb bud gene expressionLaura Aviñó-Esteban, Heura Cardona-Blaya, Marco Musy, et al.
BMC Bioinformatics|January 6, 2026
Hgtsynergy: a transfer learning method for predicting anticancer synergistic drug combinations based on a drug-drug interaction heterogeneous graphXiaowen Wang, Yanming Huang, Hongming Zhu, et al.
BMC Bioinformatics|December 30, 2025
A directed weighted network-based method for drug combinations identification using drug-target and inter-target regulationShen Xiao, Yuhang Li, Jinwei Bai, et al.
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