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Bioinformatics (Oxford, England)|May 2, 2025
Detecting known neoepitopes, gene fusions, transposable elements, and circular RNAs in cell-free RNAMayank Mahajan, Martin Hemberg
Bioinformatics (Oxford, England)|May 2, 2025
In silico identification of archaeal DNA-binding proteinsLinus Donvil, Joëlle A J Housmans, Eveline Peeters, et al.
Bioinformatics (Oxford, England)|March 31, 2025
XPRS: a tool for interpretable and explainable polygenic risk scoreNa Yeon Kim, Seunggeun Lee
Bioinformatics (Oxford, England)|May 29, 2025
Brownian motion data augmentation: a method to push neural network performance on nanopore sensorsJavier Kipen, Joakim Jaldén
Bioinformatics (Oxford, England)|June 6, 2025
SVbyEye: a visual tool to characterize structural variation among whole-genome assembliesDavid Porubsky, Xavi Guitart, DongAhn Yoo, et al.
Bioinformatics (Oxford, England)|June 5, 2025
SNACS: a tool for demultiplexing single-cell DNA sequencing dataVanessa E Kennedy, Ritu Roy, Cheryl A C Peretz, et al.
Bioinformatics (Oxford, England)|May 20, 2025
OrthologAL: a Shiny application for quality-aware humanization of non-human pre-clinical high-dimensional gene expression dataRishika Chowdary, Robert K Suter, Matthew D'Antuono, et al.
Bioinformatics (Oxford, England)|May 27, 2025
scNucMap: mapping the nucleosome landscapes at single-cell resolutionQianming Xiang, Binbin Lai
Bioinformatics (Oxford, England)|May 21, 2025
epLSAP-Align: a non-sequential protein structural alignment solver with entropy-regularized partial linear sum assignment problem formulationXuechen Zhang, Zhuoyang Chen, Junyu Li, et al.
Bioinformatics (Oxford, England)|May 13, 2025
A noise-robust classification method for cryo-ET subtomograms with out-of-distribution detectionWenjia Meng, Xueshi Yu, Tingting Zhang, et al.
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