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Bioinformatics Advances|May 21, 2025
mirrorCheck: an R package facilitating informed use of DESeq2's lfcShrink() function for differential gene expression analysis of clinical samplesKatherine Elise Scull, Kiarash Behrouzfar, Daniella Brasacchio, et al.
Bioinformatics Advances|July 25, 2025
Hybrid representation learning for human m6A modifications with chromosome-level generalizabilityMuhammad Tahir, Sheela Ramanna, Qian Liu
Bioinformatics Advances|July 9, 2025
Prediction of the infecting organism in peritoneal dialysis patients with acute peritonitis using interpretable Tsetlin MachinesOlga Tarasyuk, Anatoliy Gorbenko, Matthias Eberl, et al.
Bioinformatics Advances|July 9, 2025
DAPCy: a Python package for the discriminant analysis of principal components method for population genetic analysesAlejandro Correa Rojo, Pieter Moris, Hanne Meuwissen, et al.
Bioinformatics Advances|July 18, 2025
X-CRISP: domain-adaptable and interpretable CRISPR repair outcome predictionColm Seale, Joana P Gonçalves
Bioinformatics Advances|July 11, 2025
RaptGen-UI: an integrated platform for exploring and analyzing the sequence landscape of HT-SELEX experimentsRyota Nakano, Natsuki Iwano, Akiko Ichinose, et al.
Bioinformatics Advances|June 4, 2025
Quantifying the nuclear localization of fluorescently tagged proteinsJulien Hurbain, Pieter Rein Ten Wolde, Peter S Swain
Bioinformatics Advances|June 2, 2025
cfTools: an R/Bioconductor package for deconvolving cell-free DNA via methylation analysisRan Hu, Shuo Li, Mary L Stackpole, et al.
Bioinformatics Advances|May 7, 2025
rPIMS: a ShinyR package for the precision identification and modelling of livestock breeds using genomic data and machine learning approachesYuhetian Zhao, Xuexue Liu, Benmeng Liang, et al.
Bioinformatics Advances|April 28, 2025
VirDiG: a de novo transcriptome assembler for coronavirusMinghao Li, Xuaoyu Guo, Jin Zhao
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