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Bioinformatics Advances|November 3, 2025
Asymmetric integration of various cancer datasets for identifying risk-associated variants and genesRuixuan Wang, Lam Tran, Benjamin Brennan, et al.
Bioinformatics Advances|October 31, 2025
ProtFun: a protein function prediction model using graph attention networks with a protein large language modelMuhammed Talo, Serdar Bozdag
Bioinformatics Advances|October 17, 2025
Craft: a machine learning approach to dengue subtypingDaniel J van Zyl, Marcel Dunaiski, Houriiyah Tegally, et al.
Bioinformatics Advances|October 13, 2025
RMapAlign3N: fast mapping of 3N-ReadsAndre Müller, Alexander Wichmann, Felix Kallenborn, et al.
Bioinformatics Advances|October 13, 2025
sc2DAT: workflow for targeting tumor subpopulations of single cellsGiacomo B Marino, Anna I Byrd, Nasheath Ahmed, et al.
Bioinformatics Advances|October 17, 2025
SocialViruses: integrating quantitative phage-bacteria and phage-phage interaction networks for rational cocktail designFelipe Molina, Manuel Menor-Flores, Miguel A Vega-Rodríguez
Bioinformatics Advances|September 26, 2025
EMICSS: added-value annotations for EMDB entriesAmudha Kumari Duraisamy, Neli Fonseca, Gerard J Kleywegt, et al.
Bioinformatics Advances|August 14, 2025
Volcano: a pipeline to characterize long terminal repeat-retrotransposons families in plantsHao He, Fei Shen, Yong Hou, et al.
Bioinformatics Advances|September 8, 2025
ResLysEmbed: a ResNet-based framework for succinylated lysine residue prediction using sequence and language model embeddingsSouvik Ghosh, Md Muhaiminul Islam Nafi, M Saifur Rahman
Bioinformatics Advances|September 8, 2025
Multimodal deep learning for predicting protein ubiquitination sitesSubash C Pakhrin, Moriah R Beck, Punjan Subedi, et al.
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