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Bioinformatics Advances|July 15, 2025
A hierarchical negative-binomial model for analysis of correlated sequencing data: practical implementationsKatarzyna Górczak, Tomasz Burzykowski, Jürgen Claesen
Bioinformatics Advances|July 16, 2025
Survey and improvement strategies for gene prioritization with large language modelsMatthew B Neeley, Guantong Qi, Guanchu Wang, et al.
Bioinformatics Advances|June 27, 2025
Harpy: a pipeline for processing haplotagging linked-read dataPavel V Dimens, Ryan P Franckowiak, Azwad Iqbal, et al.
Bioinformatics Advances|June 26, 2025
Predicting gene expression using millions of yeast promoters reveals cis-regulatory logicTirtharaj Dash, Susanne Bornelöv
Bioinformatics Advances|June 23, 2025
TROPPO: tissue-specific reconstruction and phenotype prediction using omics dataAlexandre Oliveira, Jorge Ferreira, Vítor Vieira, et al.
Bioinformatics Advances|December 15, 2025
SeqManager: a web-based tool for efficient sequencing data storage management and duplicate detectionMargot Celerier, Andrew J Oldfield, William Ritchie
Bioinformatics Advances|December 18, 2025
SurprisalAnalysis: an open-source software for information-theoretic analysis of gene expressionAnnice Najafi
Bioinformatics Advances|December 15, 2025
Integrating differential privacy into federated multi-task learning algorithms in dsMTLRoman Schefzik, Han Cao, Sivanesan Rajan, et al.
Bioinformatics Advances|December 15, 2025
tskit_arg_visualizer: interactive plotting of ancestral recombination graphsJames Kitchens, Yan Wong
Bioinformatics Advances|December 12, 2025
ntRoot: computational inference of human ancestry at scale from genomic dataRené L Warren, Lauren Coombe, Johnathan Wong, et al.
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