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Bioinformatics Advances|September 18, 2023
Toward computing attributions for dimensionality reduction techniquesMatthew Scicluna, Jean-Christophe Grenier, Raphaël Poujol, et al.Bioinformatics Advances|September 18, 2023
WSIC: a Python package and command-line interface for fast whole slide image conversionJohnathan Pocock, Shan E Ahmed Raza, Fayyaz Minhas, et al.Bioinformatics Advances|October 14, 2024
RNAelem: an algorithm for discovering sequence-structure motifs in RNA bound by RNA-binding proteinsHiroshi Miyake, Risa Karakida Kawaguchi, Hisanori KiryuBioinformatics Advances|October 14, 2024
VCAb: a web-tool for structure-guided exploration of antibodiesDongjun Guo, Joseph Chi-Fung Ng, Deborah K Dunn-Walters, et al.Bioinformatics Advances|October 11, 2024
DynProfiler: a Python package for comprehensive analysis and interpretation of signaling dynamics leveraged by deep learning techniquesMasato Tsutsui, Mariko OkadaBioinformatics Advances|October 16, 2024
DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic dataSlim Karkar, Ashwini Sharma, Carl Herrmann, et al.Bioinformatics Advances|September 25, 2024
Evaluating GPT and BERT models for protein-protein interaction identification in biomedical textHasin Rehana, Nur Bengisu Çam, Mert Basmaci, et al.Bioinformatics Advances|May 30, 2023
EpiCompare: R package for the comparison and quality control of epigenomic peak filesSera Choi, Brian M Schilder, Leyla Abbasova, et al.Bioinformatics Advances|March 5, 2026
rMAP 2.0: a modular, reproducible, and scalable WDL-Cromwell-Docker workflow for genomic analysis of ESKAPEE pathogensGerald Mboowa, Ivan Sserwadda, Stephen KanyereziBioinformatics Advances|March 9, 2026
MIRit: an integrative R framework for the identification of impaired miRNA-mRNA regulatory networks in complex diseasesJacopo Ronchi, Maria FotiPageof 114