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Bioinformatics Advances|September 26, 2026
Theoretical estimates on the expected number of mutations needed to reconstruct clonal lineage treesNishat Anjum Bristy, Russell SchwartzBioinformatics Advances|September 25, 2026
MosaicLev: modified Levenshtein distance for mobile element-aware genome comparisonHarry Stoltz, Thomas E KuhlmanBioinformatics Advances|September 29, 2026
Correction: Bioinformatics in Español: expanding open, diverse, and collaborative science through SEH2BioinfoBioinformatics Advances|October 1, 2026
GlycoTraitR: an R package for characterizing structural heterogeneity in N-linked glycoproteomics dataBingyuan Zhang, Koichi Himori, Yusuke MatsuiBioinformatics Advances|October 1, 2026
NeighborFinder: an R package inferring local microbial network around a species of interestMathilde Sola, Adrien Paravel, Sandrine Auger, et al.Bioinformatics Advances|October 10, 2026
RCSB PDB AI Help Desk: retrieval-augmented generation for protein structure deposition supportVivek Reddy Chithari, Jasmine Y Young, Irina Persikova, et al.Bioinformatics Advances|February 10, 2025
Sequali: efficient and comprehensive quality control of short- and long-read sequencing dataRuben H P VordermanBioinformatics Advances|March 5, 2025
FAIRification of the DMRichR pipeline: advancing epigenetic research on environmental and evolutionary model organismsWassim Salam, Marcin W Wojewodzic, Dagmar FrischBioinformatics Advances|March 5, 2025
easyEWAS: a flexible and user-friendly R package for epigenome-wide association studyYuting Wang, Meijie Jiang, Siyuan Niu, et al.Bioinformatics Advances|February 3, 2025
Flexible fitting of AlphaFold2-predicted models to cryo-EM density maps using elastic network models: a methodical affirmationMaytha Alshammari, Jing He, Willy WriggersPageof 114